Biochemistry

Krebs Cycle Definition, Steps, Products, Regulation.

Krebs Cycle is cellular respiration, where involves a series of chemical reactions that release the stored energy via oxidation of acetyl-CoA. The...

Krebs Cycle Definition, Steps, Equation, Regulation.
Krebs Cycle Definition, Steps, Equation, Regulation.

What is the krebs cycle?

  • The Krebs Cycle is also known as The citric acid cycle or TCA cycle (tricarboxylic acid cycle).
  • Krebs Cycle is cellular respiration, where involves a series of chemical reactions that release the stored energy via oxidation of acetyl-CoA. The aerobic organisms perform this TCA cycle.
  • The acetyl-CoA is generated from Pyruvate (End product of Glycolysis) by the enzyme Pyruvate dehydrogenase complex and in the presence of coenzymes TPP, NAD, FAD, Lipoate, acetyl CoA.
  • In 1937, Hans Adolf Krebs discovered The citric acid cycle, for which he received Nobel Prize for Physiology or Medicine in 1953.
  • The total amount of energy yield from the TCA cycle is three NADH, one FADH2, and one GTP. 
  • The Krebs cycle occurs in the Mitochondria of eukaryotic cells and in Prokaryotic cells (lacks mitochondria) or bacteria Krebs cycle takes place in the cytosol.

Krebs Cycle Steps with Diagram

  1. In the First step, the generated acetyl CoA is combined with the oxaloacetate and forms citrate with the release of acetyl group. The conversation is catalyzed by the enzyme citrate synthase. H2o is involved in this reaction.
  2. The citrate first undergoes the dehydration process and forms cis-aconitate then undergoes hydration processes to form isocitrate. The whole reaction is catalyzed by the enzyme aconitase.
  3. The isocitrate then undergoes oxidative decarboxylation process and forms α-ketoglutarate with the formation of NADH from NAD. The reaction is catalyzed by the enzyme isocitrate dehydrogenase.
  4. The α-ketoglutarate is oxidized by reducing the NAD to NADH and releasing one molecule of CO2. Then it picks up Coenzyme A and converts into an Unstable compound called Succinyl CoA. The reaction is catalyzed by the enzyme α-ketoglutarate dehydrogenase.
  5. The Succinyl CoA released the CoA-SH and converted it into Succinate. In this step ADP or GDP is converted into ATP or GTP. The reaction is catalyzed by the enzyme Succinyl CoA synthetase.
  6. Succinate is converted into Fumarate with the release to two hydrogen atoms. In this step, FAD is converted into FADH2. The reaction is catalyzed by the enzyme succinate dehydragenase.
  7. The Fumarate is converted into Malate with the help of the enzyme Fumarase.
  8. The malate is now converted into Oxaloacetate with the release of two hydrogen ion. In this step, NAD is converted into NADH and the reaction is catalyzed by Malate dehydrogensae.
Krebs Cycle Steps
Krebs cycle diagram | Image Source https://cdn.kastatic.org/ka-perseus-images/c73be347d6cea4b366f3edf7a81806d89f81c3a3.png

The Overall Krebs cycle equation is;

2 acetyl groups + 6 NAD+ + 2 FAD + 2 ADP + 2 Pi = 4 CO2 + 6 NADH + 6 H+ + 2 FADH2 + 2 ATP

Krebs Cycle Products

The followings are the end product of krebs cycle;

  • Two molecules of Carbon dioxide.
  • Three NADH, and one FADH.
  • One ATP or GTP is produced.

These numbers are for one molecule of Acetyl CoA. If we calculate the Product yield from each glucose which is two Acetyl CoA molecules, then we need to multiply these numbers by 2.

Total ATP yield from TCA Cycle

In TCA cycle the ATP is not directly generated, the ATP is generated through the oxidative

Phosphorylation.

During the oxidative Phosphorylation one NADH generates 2.5 or 3 ATP, one FADH2 generates 1.5 or 2 ATP, and one GTP generates 1 ATP. 

The number of ATP yield from one molecule of acetyl CoA in TCA cycle is 12 and the total yield number will be 24 ATP for two molecules of acetyl CoA. 

So, the total ATP yield will be (3*3)+2+1=12 ATP for one Acetyl CoA. For 2 molecules of acetyl, the total ATP yield will be 2*12=24.

Regulation of Krebs Cycle

  • The high ratio of [ATP]/[ADP], [NADH]/[NAD], and [acetyl-CoA]/[CoA] allosterically inhibits the PDH complex. If these ratios are decrease, the allosteric activation of pyruvate oxidation results.
  • Increased rate of Calcium ion in mitochondrial matrix activates the pyruvate dehydrogenase complex, isocitrate dehydrogenase, and α-ketoglutarate dehydrogenase.
  • The Long-chain acetyl CoA and ATP allosterically inhibits the Citrate synthase.
  • NADH and ATP inhibits the Isocitrate dehydrogenase.
  • NADH and succinyl CoA inhibits the α-ketoglutarate dehydrogenase.
  • Oxaloacetate inhibits the succinate dehydrogenase enzyme.
  • The citrate blocks citrate synthase.

Difference between glycolysis and krebs cycle

CharactersKrebs CycleGlycolysis
DefinitionKrebs cycle, also known as the citric acid cycle or tricarboxylic acid cycle (TCA cycle), refers to the series of chemical reactions in which pyruvate is converted to acetyl-CoA and is completely oxidized into carbon dioxide and water.Glycolysis refers to the series of chemical reaction in which a glucose molecule is converted into two pyruvic acid molecules.
LocationKrebs cycle occurs inside the mitochondria of eukaryotes.Glycolysis occurs in the cytoplasm.
ProcessThe Krebs cycle is involved in the complete oxidation of pyruvate into carbon dioxide and water.The glycolysis is involved in the degradation of glucose into two molecules of pyruvate.
Aerobic/Anaerobic RespirationThe Krebs cycle only occurs in aerobic respiration.The glycolysis occurs in both aerobic and anaerobic respiration.
StepKrebs cycle is the second step of the cellular respiration.Glycolysis is the first step of the cellular respiration.
Carbon DioxideCarbon dioxide is released during the process of Krebs cycle.No carbon dioxide is released during the process of glycolysis.
End ProductThe end product of Krebs cycle is an inorganic carbon substance.The end product of glycolysis is an organic substance.
Net Gain of EnergyThe net gain of energy of the Krebs cycle is equal to 24 ATP molecules.The net gain of energy of the glycolysis is equal to 8 ATP molecules.
Net GainKrebs cycle produces six NADH molecules and two FADH2 molecules.Glycolysis produces two pyruvate molecules, two ATP molecules, two NADH molecules.
Oxidative PhosphorylationKrebs cycle is connected with the oxidative phosphorylation.Glycolysis is not connected with the oxidative phosphorylation.
Linear/CyclicThe Krebs cycle is a cyclic process.The glycolysis is a linear process.
Consumption of ATPKrebs cycle consumes no ATP.Glycolysis consumes two ATP molecules.
OxygenThe Krebs cycle uses oxygen as the terminal oxidant.Glycolysis does not require oxygen.

References

  • https://pediaa.com/difference-between-krebs-cycle-and-glycolysis/
  • https://en.wikipedia.org/wiki/Citric_acid_cycle
  • https://www.khanacademy.org/science/biology/cellular-respiration-and-fermentation/pyruvate-oxidation-and-the-citric-acid-cycle/a/the-citric-acid-cycle

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